che wei hsu cover photo

Che-Wei Hsu

Born and raised in Taichung, Taiwan, I earned my B.S. in Biochemistry and M.S. in Agronomy from National Taiwan University before completing my Ph.D. in Developmental Biology and Bioinformatics in Ohler lab at MDC-BIMSB (Berlin, Germany). There, I established a collaboration with Philip Benfey’s lab at Duke University (NC, USA) and co-developed a widely used single-cell root transcriptomic atlas.

In 2023, I joined Benfey lab as a postdoc, where I developed computational approaches for single-cell analysis of hormone responses, revealing gene regulatory programs that couple signaling with cell-cycle progression, and later extended these methods to crop roots under mechanical stress and plant–microbe interactions.

I am currently a postdoctoral fellow at Nolan lab at Caltech (CA, USA), where I develop agentic AI-powered methods that integrate single-cell and 3D spatial transcriptomic data to build a cellular morphological atlas of the root. My research aims to uncover how individual cells coordinate developmental programs to assemble a functional plant organism in space and time.

Education

Education is the comprehensive process of acquiring knowledge, developing skills, and shaping one’s intellectual, moral and social character to prepare for life and contribute to society

Humboldt University (Humboldt Universität zu Berlin)                                         2019 – 2022

Ph.D. in Developmental Biology and Bioinformatics

National Taiwan University                                                                                            2016 – 2018

M.S. in Agronomy, Crop Division

National Taiwan University                                                                                             2012 – 2016

B.S. in Biochemistry

10+ years of research

A long-term commitment to advancing plant systems and computational biology toward resilient agriculture

10+

Publications

10+

Conferences

10+

Paper reviews

6+

Mentees