Che-Wei Hsu
Born and raised in Taichung, Taiwan, I earned my B.S. in Biochemistry and M.S. in Agronomy from National Taiwan University before completing my Ph.D. in Developmental Biology and Bioinformatics in Ohler lab at MDC-BIMSB (Berlin, Germany). There, I established a collaboration with Philip Benfey’s lab at Duke University (NC, USA) and co-developed a widely used single-cell root transcriptomic atlas.
In 2023, I joined Benfey lab as a postdoc, where I developed computational approaches for single-cell analysis of hormone responses, revealing gene regulatory programs that couple signaling with cell-cycle progression, and later extended these methods to crop roots under mechanical stress and plant–microbe interactions.
I am currently a postdoctoral fellow at Nolan lab at Caltech (CA, USA), where I develop agentic AI-powered methods that integrate single-cell and 3D spatial transcriptomic data to build a cellular morphological atlas of the root. My research aims to uncover how individual cells coordinate developmental programs to assemble a functional plant organism in space and time.
Education
Education is the comprehensive process of acquiring knowledge, developing skills, and shaping one’s intellectual, moral and social character to prepare for life and contribute to society
Humboldt University (Humboldt Universität zu Berlin) 2019 – 2022
Ph.D. in Developmental Biology and Bioinformatics
National Taiwan University 2016 – 2018
M.S. in Agronomy, Crop Division
National Taiwan University 2012 – 2016
B.S. in Biochemistry
10+ years of research
A long-term commitment to advancing plant systems and computational biology toward resilient agriculture
